Support pretty URLs

This changeset allows ownCloud to run with pretty URLs, they will be used if mod_rewrite and mod_env are available. This means basically that the `index.php` in the URL is not shown to the user anymore.

Also the not deprecated functions to generate URLs have been modified to support this behaviour, old functions such as `filePath` will still behave as before for compatibility reasons.

Examples:
http://localhost/owncloud/index.php/s/AIDyKbxiRZWAAjP => http://localhost/owncloud/s/AIDyKbxiRZWAAjP
http://localhost/owncloud/index.php/apps/files/ => http://localhost/owncloud/apps/files/

Due to the way our CSS and JS is structured the .htaccess uses some hacks for the final result but could be worse... And I was just annoyed by all that users crying for the removal of `index.php` ;-)