Exclude tree and searchData from concatenated JS.

I'd like to include the compressed version also to release version
of JSDuck - these files have to be referenced separately then.

Also excluded the localStorageDb name config - similar case.

template/index.html

@@ -20,20 +20,16 @@
 
   <script type="text/javascript" src="http://use.typekit.com/uxj6dew.js"></script>
   <script type="text/javascript">try{Typekit.load();}catch(e){}</script>
-
+  <script type="text/javascript">Docs = {localStorageDb: "{local_storage_db}"};</script>
   <!-- BEGIN JS -->
   <script type="text/javascript" src="resources/codemirror/codemirror.js"></script>
   <script type="text/javascript" src="resources/codemirror/javascript.js"></script>
-
   <script type="text/javascript" src="{extjs_path}"></script>
   <script type="text/javascript" src="resources/prettify/prettify.js"></script>
-
-  <script type="text/javascript">Docs = {localStorageDb: "{local_storage_db}"};</script>
   <script type="text/javascript" src="app.js"></script>
-
+  <!-- END JS -->
   <script type="text/javascript" src="output/tree.js"></script>
   <script type="text/javascript" src="output/searchData.js"></script>
-  <!-- END JS -->
 
   {head_html}